Chocolate Cheesecake Cookies
I loved my pumpkin cheesecake cookies so much that I decided to make a chocolate version! These chocolate cheesecake cookies are just as delicious.
They’re filled with a creamy cheesecake filling and bake up soft and chewy with a deliciously creamy center!

Chocolate Cheesecake Cookie Ingredients & Substitutions
I love this recipe just the way it is, but I know some people might not have all of these ingredients on hand! Or you might have food restrictions or allergies.
Below are some swaps and variations that I’ve tested out and can be made in this recipe.
- All-Purpose Flour – You can use a gluten-free flour blend if needed in place of the AP flour in this recipe.
- Unsweetened Cocoa Powder – Any type of baking cocoa will work in this recipe. I usually use Ghirardelli, but dark or black cocoa powder would taste great in this recipe too!
- Unsalted Butter – If you only have salted butter, you can use it and omit the salt that this recipe calls for. You can also use vegan butter.
- Brown Sugar – I like using light brown sugar, but dark brown sugar will work too.
- Granulated Sugar – This recipe turns out best with a combination of granulated sugar and brown sugar but you can also use additional light brown sugar in place of the granulated sugar if that’s all you have on hand.
- Instant Coffee or Espresso – This doesn’t make the cookies taste like coffee, it just enhances the chocolate flavor in this recipe. If you need to omit it you can, but I really recommend using it if possible.

Making These Chocolate Cheesecake Cookies
Let’s walk through each step of these chocolate cheesecake cookies to make sure they turn out as amazing as possible.
Step 1: Make the Chocolate Cookie Dough
The first step is to make the chocolate cookie dough. Cream together the butter, brown sugar, and white sugar with a stand or hand mixer until the mixture lightens in color (about 1 minute).
Dissolve the instant espresso in vanilla extract and pour into the butter mixture. Add the egg yolks and mix on a medium speed until combined.


Then mix in the flour, cocoa powder, baking powder, and fine salt at a low speed until just combined. Scrape the sides and bottom of the bowl as needed.
Use a cookie scoop or spoon to make 2 1/2 Tbsp balls of cookie dough. There should be enough dough to make 12 cookie dough balls.
Place on a parchment-lined baking sheet and chill in the fridge for at least 30 minutes or overnight.



Step 2: Make the Cheesecake Filling
While the cookie dough chills, make the cheesecake filling.
Use an electric mixer to beat together the cream cheese, granulated sugar, and vanilla extract. Mix on a medium-high speed until combined and smooth.
Use a spoon to add about 12 dollops (about 1 Tbsp each) of the cheesecake filling onto a parchment paper lined plate or tray.

Place in the freezer for at least 45 minutes or until frozen and firm to the touch. These can also be made in advance or frozen overnight.
Step 3: Fill These Chocolate Cheesecake Cookies
Preheat your oven to 350 F / 175 C and line two large cookie sheets with parchment paper or silicon mats.
Remove the cookie dough and cheesecake dollops from the fridge and freezer.
Flatten the cookie dough balls in the palm of your hand. If you have warm hands, flatten the cookie dough between two sheets of parchment paper.
Place a dollop of cheesecake in the center and wrap the overhanging cookie dough around the filling, doing your best to cover it.



If there is a little bit of cheesecake filling peeking through, don’t worry! Just make that the bottom of the cookie when you bake them. They’ll still bake up just fine!
If you notice the cookie dough or cheesecake filling is getting too soft to handle, pop the dough in the fridge and the cheesecake filling in the freezer to make it easier to handle.
Place 1/3 cup of granulated sugar in a small bowl and toss the cookies in granulated sugar until they’re fully coated.
Place them on the lined baking sheets and space them about 3 inches apart. They spread as they bake so they need a little room!

Bake for 16-19 minutes, or until the cookies have set on the outside. Place them on a wire rack to cool, then enjoy!
Leftover cookies can be stored in an airtight container in the fridge for up to 10 days.
Chocolate Cheesecake Cookie Troubleshooting
While these cookies are absolutely worth the effort, filling and rolling them can be a bit challenging. It’s also a messy process, so get ready to get your hands a little dirty!
The dough is easiest to flatten and roll after it’s been in the fridge for an hour or two.
The cheesecake filling needs at least 45 minutes in the freezer and can be made in advance or chilled overnight.

My hands are always cold so it’s pretty easy for me to flatten the dough in the palm of my hand. If your hands run warm, flatten the cookie dough between two pieces of parchment paper.
Or if you notice the cookie dough or cheesecake filling is getting too soft, pop the dough in the fridge and the cheesecake filling in the freezer to make them easier to handle.
Tips for Making the Best Chocolate Cheesecake Cookies
- Chilling the cookie dough is a must! It’s almost impossible to fill these cookies if the dough isn’t chilled. I find they’re easiest to roll out when they’ve been in the fridge for an hour or two.
- Use a cookie scoop to make sure your cookies are uniformly sized.
- Thoroughly coat each cookie with granulated sugar. It really adds the the texture of these cookies.
- If you have warm hands, flatten the cookie dough between two sheets of parchment paper.
- Don’t worry if there’s a little bit of cheesecake filling peeking through a small crack in the cookie dough. It will bake up just fine and be covered with sugar!
- Space your cookies about 3 inches apart before baking them. They will spread as they bake.
- Don’t over-bake the cookies! They don’t really brown, so you have to keep an eye on the texture of the top of the cookie. Even if they seem a bit soft coming out of the oven, they will continue to bake and set on the tray once they’re out of the oven.
- If you want to make the filling chocolate cheesecake, add 1 Tbsp of cocoa powder to your cheesecake filling.

How Many Cookies Does this Recipe Make?
The recipe makes about 12 cookies (2.5 Tbsp scoops of dough per cookie). However, you can also make mini chocolate cookies that are half the size!
Scoop 20 cookie dough balls (about 1.5 Tbsp each) and bake for 9-12 minutes at 350 F / 175 C.
Making these Chocolate Cheesecake Cookies in Advance & Storage Tips
If you have any leftover cookies, they can be stored in an airtight container or Ziplock bag for up to 10 days in the fridge. In fact, I think they taste best after they’ve been chilled in the fridge!
You can also freeze baked cookies for up to a month. I like to thaw them in the fridge overnight.
If you make the cookie dough in advance, you can freeze stuffed (and unbaked) cookies in an airtight container for up to a month. Let the cookies thaw in the fridge overnight, then bake as instructed.

Let Me Know What You Think!
If you try this recipe for chocolate cheesecake cookies I’d love to hear what you think! Please leave a rating and let me know your thoughts by sharing a comment below.
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Chocolate Cheesecake Cookies
Ingredients
Chocolate Cookies
- 1 1/4 cups all-purpose flour 160g
- 1/4 cup unsweetened or dark cocoa powder 25g
- 1/2 tsp baking soda 4g
- 1/4 tsp fine salt 1g
- 1/2 cup (1 stick) unsalted butter, room temperature 113g
- 2/3 cup packed light brown sugar 133g
- 1/4 cup granulated sugar 50g
- 1/2 tsp instant coffee or espresso 1g
- 2 large egg yolks 40g
Cheesecake Filling
- 3/4 cup (6 oz) cream cheese, room temperature 170g
- 1/4 cup granulated sugar 50g
- 1 tsp vanilla extract or vanilla bean paste 4ml
Crunchy Sugar Coating
- 1/3 cup granulated sugar 66g
Instructions
Chocolate Cookies
- Whisk together the flour, cocoa powder, baking soda, and salt in a medium-sized bowl. Set aside.
- Cream together the butter, brown sugar, and white sugar with a stand or hand mixer until the mixture lightens in color (about 1 minute).
- Dissolve 1/2 tsp of instant espresso in 1 tsp of water and pour into the butter mixture. Add 2 egg yolks and mix on a medium speed until combined.
- Mix in the dry ingredients on a low speed until just combined. Scrape the sides and bottom of the bowl as needed.
Cheesecake Filling
- While the cookie dough chills, make the cheesecake filling! Use an electric mixer to beat together the cream cheese, granulated sugar and vanilla extract. Mix on a medium high speed until combined and smooth.
- Use a spoon to add about 12 dollops (about 1 Tbsp each) of the cheesecake filling onto a parchment paper lined plate or tray. Place in the freezer for at least 45 minutes or until frozen and firm to the touch. These can also be made in advance or frozen overnight.
Assembling the Chocolate Cheesecake Cookies
- Preheat your oven to 350 F / 175 C and line two large cookie sheets with parchment paper or silicon mats.
- Remove the cookie dough and cheesecake dollops from the fridge and freezer.
- Very lightly wet your hands with water. Flatten the cookie dough balls in the palm of your hand and place the cheesecake filling in the center. If you have warm hands, flatten the cookie dough between two sheets of parchment paper.
- Place a dollop of cheesecake in the center and wrap the overhanging cookie dough around the filling, doing your best to cover it. If there is a little bit of cheesecake filling peeking through, don't worry! Just make that the bottom of the cookie when you bake them. They'll still bake up just fine! If you notice the cookie dough or cheesecake filling is getting too soft to handle, pop the dough in the fridge and the cheesecake filling in the freezer to make them easier to handle.
- Place 1/3 cup of granulated sugar in a small bowl and toss the cookies in granulated sugar until they're fully coated. Place them on the lined baking sheets and space them about 3 inches apart. They spread as they bake so they need a little room!
- Bake for 16-18 minutes, or until the cookies have set on the outside. Place them on a wire rack to cool, then enjoy!
- Leftover cookies can be stored in an airtight container in the fridge for up to 10 days.
Video
Notes
Making the Best Chocolate Cheesecake Cookies
- Chilling your cookie dough is a must! It's almost impossible to fill these cookies if the dough isn't chilled. I find they're easiest to roll out when they've been in the fridge for an hour or two.
- Use a cookie scoop to make sure your cookies are uniformly sized.
- Thoroughly coat each cookie with sugar. It really adds the the texture of these cookies.
- If you have warm hands, flatten the cookie dough between two sheets of parchment paper.
- Wet your hands before flattening and rolling out the cookie dough. It will help prevent them from sticking to your hands.
- Don't worry if there's a little bit of cheesecake filling peaking through a small crack in the cookie dough. It will bake up just fine and be covered with sugar!
- Space your cookies about 3 inches apart before baking them. They will spread as they bake.
- Don't over-bake your cookies! They don't really brown, so you have to keep an eye on the texture of the top of the cookie. Even if they seem a bit soft coming out of the oven, they will continue to bake and set on the tray once they're out of the oven.
- If you want to make the filling chocolate cheesecake, add 1 Tbsp of cocoa powder into your cheesecake filling.
Making These Cookies in Advance and Storing Them
- In the off chance that you have any leftover cookies, they can be stored in an airtight container for up to 10 days in the fridge.
- You can also freeze baked cookies for up to a month. I like to thaw them in the fridge overnight, then heat them in the microwave for 10-15 seconds to make the centers gooey again.
- If you make the cookie dough in advance, you can freeze stuffed cookies in an airtight container for up to a month. Let the cookies thaw in the fridge overnight, then bake as instructed.


Can I use black cocoa in replace off the instant espresso?
I just made these for a cookie exchange and they were a huge hit! I was interested in the idea of the cheesecake stuffed cookie when you released the pumpkin ones but am not a huge fan of pumpkin. These were delicious and everything I had hoped they would be!
My cookies taste delicious however they cracked. Any reason foe why this happened?
@Mirna Ossa, I’m not sure it’s possible to avoid it. The moisture from the cream cheese turns to steam when they cook and it has to come out somewhere. I’ve made these probably half a dozen times now and they crack every time. I don’t mind because I don’t care how they look as long as they taste good, and they’ve been a hit at every function I’ve brought them to.
My phone wouldn’t let me rate these 5 stars but that’s the rating I would give! I made these for my daughter’s Harry Potter themed birthday and did a spin on the cheesecake filling and coloured 4 portions of it with the Hogwarts house colours (yellow, blue, red and green), then called them ‘sorting hat’ cookies. You didn’t know which house you got until you bit into them and saw the filling colour. They were such a hit, and very delicious. Not a crumb left at the end of the party.!
Ah that is such a cute idea Zoe!! I bet everyone loved them!!!!!! I need to keep that in mind for the future, thanks for sharing 🙂